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1

Buried Alive: Microbes from Ancient Halite

Jaakkola, Salla T., Ravantti, Janne J., Oksanen, Hanna M., Bamford, Dennis H.

Journal:

Trends in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.69 MB

english, 2016

2

The complete genome of a viable archaeum isolated from 123-million-year-old rock salt

Jaakkola, Salla T., Pfeiffer, Friedhelm, Ravantti, Janne J., Guo, Qinggong, Liu, Ying, Chen, Xiangdong, Ma, Hongling, Yang, Chunhe, Oksanen, Hanna M., Bamford, Dennis H.

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 2.22 MB

english, 2016

3

HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae

Demina, Tatiana, Pietilä, Maija, Svirskaitė, Julija, Ravantti, Janne, Atanasova, Nina, Bamford, Dennis, Oksanen, Hanna

Journal:

Year:

2017

Language:

english

File:

PDF, 3.17 MB

english, 2017

4

Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage

Janne J Ravantti, Ausra Gaidelyte, Dennis H Bamford, Jaana K.H Bamford

Journal:

Year:

2003

Language:

english

File:

PDF, 577 KB

english, 2003

5

Geminiviruses: a tale of a plasmid becoming a virus

Mart Krupovic, Janne J Ravantti, Dennis H Bamford

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 1.65 MB

english, 2009

6

A Data Mining Approach for Analyzing Density Maps Representing Macromolecular Structures

Janne J. Ravantti, Dennis H. Bamford

Journal:

Journal of Structural Biology

Year:

1999

Language:

english

File:

PDF, 1.25 MB

english, 1999

7

Local Average Intensity-Based Method for Identifying Spherical Particles in Electron Micrographs

Teemu Kivioja, Janne Ravantti, Anatoly Verkhovsky, Esko Ukkonen, Dennis Bamford

Journal:

Journal of Structural Biology

Year:

2000

Language:

english

File:

PDF, 653 KB

english, 2000

8

A Snapshot of Viral Evolution from Genome Analysis of the Tectiviridae Family

Ari-Matti Saren, Janne J. Ravantti, Stacy D. Benson, Roger M. Burnett, Lars Paulin, Dennis H. Bamford, Jaana K.H. Bamford

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 808 KB

english, 2005

9

An Ancient Mechanism for Splicing Control: U11 snRNP as an Activator of Alternative Splicing

Jens Verbeeren, Elina H. Niemelä, Janne J. Turunen, Cindy L. Will, Janne J. Ravantti, Reinhard Lührmann, Mikko J. Frilander

Journal:

Year:

2010

Language:

english

File:

PDF, 2.11 MB

english, 2010

10

Automatic comparison and classification of protein structures

Ravantti, Janne, Bamford, Dennis, Stuart, David I.

Journal:

Journal of Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.29 MB

english, 2013

11

Plate Tectonics of Virus Shell Assembly and Reorganization in Phage Φ8, a Distant Relative of Mammalian Reoviruses

El Omari, Kamel, Sutton, Geoff, Ravantti, Janne J., Zhang, Hanwen, Walter, Thomas S., Grimes, Jonathan M., Bamford, Dennis H., Stuart, David I., Mancini, Erika J.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.95 MB

english, 2013

12

Global Changes in Cellular Gene Expression during Bacteriophage PRD1 Infection

Poranen, M. M., Ravantti, J. J., Grahn, A. M., Gupta, R., Auvinen, P., Bamford, D. H.

Journal:

Journal of Virology

Year:

2006

Language:

english

File:

PDF, 493 KB

english, 2006

13

Automated Structural Comparisons Clarify the Phylogeny of the Right-Hand-Shaped Polymerases

Monttinen, H. A. M., Ravantti, J. J., Stuart, D. I., Poranen, M. M.

Journal:

Molecular Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

14

New enveloped dsRNA phage from freshwater habitat

Bamford, Jaana K. H., Poranen, Minna M., Kohvakka, Annika, Laanto, Elina, Mäntynen, Sari, Ravantti, Janne J.

Journal:

Journal of General Virology

Year:

2015

Language:

english

File:

PDF, 1.30 MB

english, 2015

15

Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1

Aalto, A. P., Bitto, D., Ravantti, J. J., Bamford, D. H., Huiskonen, J. T., Oksanen, H. M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

16

Global Transcriptional Responses of Pseudomonas aeruginosa to Phage PRR1 Infection

Ravantti, J. J., Ruokoranta, T. M., Alapuranen, A. M., Bamford, D. H.

Journal:

Journal of Virology

Year:

2008

Language:

english

File:

PDF, 175 KB

english, 2008

17

Constituents of SH1, a Novel Lipid-Containing Virus Infecting the Halophilic Euryarchaeon Haloarcula hispanica

Bamford, D. H., Ravantti, J. J., Ronnholm, G., Laurinavicius, S., Kukkaro, P., Dyall-Smith, M., Somerharju, P., Kalkkinen, N., Bamford, J. K. H.

Journal:

Journal of Virology

Year:

2005

Language:

english

File:

PDF, 358 KB

english, 2005

18

The Single Substitution I259T, Conserved in the Plasminogen Activator Pla of Pandemic Yersinia pestis Branches, Enhances Fibrinolytic Activity

Haiko, J., Kukkonen, M., Ravantti, J. J., Westerlund-Wikstrom, B., Korhonen, T. K.

Journal:

Journal of Bacteriology

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

19

Complete Genome Sequence of the Broad Host Range Single-Stranded RNA Phage PRR1 Places It in the Levivirus Genus with Characteristics Shared with Alloleviviruses

Ruokoranta, T. M., Grahn, A. M., Ravantti, J. J., Poranen, M. M., Bamford, D. H.

Journal:

Journal of Virology

Year:

2006

Language:

english

File:

PDF, 405 KB

english, 2006

20

Insights into the pre-initiation events of bacteriophage 6 RNA-dependent RNA polymerase: towards the assembly of a productive binary complex

Sarin, L. P., Poranen, M. M., Lehti, N. M., Ravantti, J. J., Koivunen, M. R. L., Aalto, A. P., van Dijk, A. A., Stuart, D. I., Grimes, J. M., Bamford, D. H.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 7.89 MB

english, 2008

21

[IEEE Proceedings. 2nd International Symposium on 3D Data Processing, Visualization and Transmission, 2004. 3DPVT 2004. - Thessaloniki, Greece (6-9 Sept. 2004)] Proceedings. 2nd International Symposium on 3D Data Processing, Visualization and Transmission, 2004. 3DPVT 2004. - Local approximate 3D matching of proteins in viral cryo-EM density maps

Burkhardt, S., Fredriksson, K., Ojamies, T., Ravantti, J., Ukkonen, E.

Year:

2004

Language:

english

File:

PDF, 516 KB

english, 2004

22

Common Structural Core of Three-Dozen Residues Reveals Intersuperfamily Relationships

Mönttinen, Heli A.M., Ravantti, Janne J., Poranen, Minna M.

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

23

Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification

Sinclair, Robert M., Ravantti, Janne J., Bamford, Dennis H., López, Susana

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 7.00 MB

english, 2017

24

Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments

Demina, Tatiana A., Pietilä, Maija K., Svirskaitė, Julija, Ravantti, Janne J., Atanasova, Nina S., Bamford, Dennis H., Oksanen, Hanna M.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.40 MB

english, 2016

25

Complete Genome Sequence of an Aquaculture-Associated Phage, FL-1, Infecting Flavobacterium spp.

Laanto, Elina, Ravantti, Janne J., Sundberg, Lotta-Riina

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 134 KB

english, 2017

26

Virus found in a boreal lake links ssDNA and dsDNA viruses

Laanto, Elina, Mäntynen, Sari, De Colibus, Luigi, Marjakangas, Jenni, Gillum, Ashley, Stuart, David I., Ravantti, Janne J., Huiskonen, Juha T., Sundberg, Lotta-Riina

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

27

Long-term genomic coevolution of host-parasite interaction in the natural environment

Laanto, Elina, Hoikkala, Ville, Ravantti, Janne, Sundberg, Lotta-Riina

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 743 KB

english, 2017

28

Evidence for a Non-Catalytic Ion-Binding Site in Multiple RNA-Dependent RNA Polymerases

Mönttinen, Heli A. M., Ravantti, Janne J., Poranen, Minna M., Digard, Paul

Journal:

Year:

2012

Language:

english

File:

PDF, 697 KB

english, 2012

29

The use of phage FCL-2 as an alternative to chemotherapy against columnaris disease in aquaculture

Laanto, Elina, Bamford, Jaana K. H., Ravantti, Janne J., Sundberg, Lotta-Riina

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 568 KB

english, 2015

30

Ribosome profiles and riboproteomes of healthy and potato virus A and Agrobacterium -infected Nicotiana benthamiana plants

Eskelin, Katri, Varjosalo, Markku, Ravantti, Janne, Mäkinen, Kristiina

Journal:

Molecular Plant Pathology

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

31

Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin

Mönttinen, Heli A. M., Ravantti, Janne J., Poranen, Minna M., de Brevern, Alexandre G.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.78 MB

english, 2019

32

Complete Genome Sequence of Fish Pathogen Flavobacterium columnare Strain B185, Originating from Finland

Ravantti, Janne J., Laanto, Elina, Papponen, Petri, Sundberg, Lotta-Riina, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Year:

2019

File:

PDF, 145 KB

2019

33

Adapting a Phage to Combat Phage Resistance

Laanto, Elina, MÃ¤kelÃ¤, Kati, Hoikkala, Ville, Ravantti, Janne J., Sundberg, Lotta-Riina

Journal:

Year:

2020

File:

PDF, 775 KB

2020

34

Superimposition of Viral Protein Structures: A Means to Decipher the Phylogenies of Viruses

Ravantti, Janne J., Martinez-Castillo, Ane, Abrescia, Nicola G.A.

Journal:

Year:

2020

File:

PDF, 3.65 MB

2020

35

Prophages and Past Prophage-Host Interactions Revealed by CRISPR Spacer Content in a Fish Pathogen

Laanto, Elina, Ravantti, Janne J., Sundberg, Lotta-Riina

Journal:

Year:

2020

File:

PDF, 2.18 MB

2020

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